Tree Inference

Please cite:
Boc, A., Diallo, Alpha B. and Makarenkov, V. (2012), T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks, Nucleic Acids Research, 40(W1), W573-W579.

Distance methods

Parsimony

Maximum Likelihood
Neighbor-Joining[doc]
NINJA large-scale Neighbor Joining[doc]
ADDTREE[doc]
Unweighted Neighbor Joining [doc]
Circular order reconstruction[doc]
Weighted least-squares (MW)[doc]
BIONJ [doc]
FITCH (PHYLIP)[doc]
DNAPARS (PHYLIP)[doc]
PROTPARS (PHYLIP)[doc]
PARS (PHYLIP)[doc]
DOLLOP (PHYLIP)[doc]
PHYML[doc]
DNAML (PHYLIP)[doc]
DNAMLK (PHYLIP)[doc]
PROML (PHYLIP)[doc]
PROMLK (PHYLIP)[doc]
RAxML[doc]










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Boc, A., Diallo, Alpha B. and Makarenkov, V. (2012), T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks, Nucleic Acids Research, 40(W1), W573-W579.

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