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Partial HGT-Detection allows you to infer partial horizontal gene transfers
(species tree should be given by its Newick string and sequence data should be provided for the gene under study).

Paste your rooted species tree in the Newick format:

Species tree file Pasted

Paste your sequences in the sequential Phylip format (no spaces in the species names; at least one space is required in the end of a species name) into the window :

Gene sequences file Pasted

Data set : Matte-Taillez et al. (2002, gene rpl12e, 14 species)

Email address (required field; the results will be sent to you by email)

Tree inference

PhyML
Neighbor Joining

Sequence type

Amino Acids
DNA

Sliding window size

Step size

Number of replicates in bootstrap

Display transfers with bootstrap support higher than x%

Number of consecutive windows necessary to validate a transfer

Console version

UNIX/Linux/Mac version of Partial HGT-Detection v1.2

Citation
Boc, A. and Makarenkov, V. (2011), Towards an accurate identification of mosaic genes and partial horizontal gene transfers, Nucleic Acids Research, 39(21):e144.

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